Research and Publications Research Publications OverviewOur Research covers a broad spectrum of visual computing related to modeling, construction, representation, visualization and interaction techniques for multiscale dynamic molecular models of biological organisms and biotechnological structures. Our Technology will ultimately enable visual exploration and communication of virtual 3D representations of life forms integrating the most up-to-date knowledge from biological research.HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models D Kouril, T Isenberg, B Kozlikova, M Meyer, ME Gröller, I Viola IEEE Transactions on Visualization and Computer Graphics (Early Access)Multi-Scale Procedural Animations of Microtubule Dynamics Based on Measured Data T Klein, I Viola, ME Gröller, P Mindek IEEE Transactions on Visualization and Computer Graphics 26 (1), 622-632Scale Trotter: Illustrative Visual Travels across Negative Scales S Halladjian, H Miao, D Kouril, ME Gröller, I Viola, T Isenberg IEEE Transactions on Visualization and Computer Graphics 26 (1), 654-664Metabopolis: Scalable Network Layout for Biological Pathway Diagrams in Urban Map Style HY Wu, M Nöllenburg, FL Sousa, I Viola BMC Bioinformatics 20 (1), 187Data-Driven Colormap Optimization for 2D Scalar Field Visualization Q Zeng, Y Wang, J Zhang, W Zhang, C Tu, I Viola, Y Wang 2019 IEEE Visualization Conference (VIS), 266-270Visual Abstraction I Viola, M Chen, T Isenberg arXiv preprint arXiv:1910.03310Parallel Generation and Visualization of Bacterial Genome Structures T Klein, P Mindek, L Autin, DS Goodsell, AJ Olson, EM Gröller, I Viola Computer Graphics Forum 38 (7), 57-68Multi-Scale Procedural Animations of Microtubule Dynamics Based on Measured Data T Klein, I Viola, E Gröller, P Mindek IEEE transactions on visualization and computer graphics 26 (1), 622-632Scale Trotter: Illustrative Visual Travels across Negative Scales S Halladjian, H Miao, D Kouřil, ME Gröller, I Viola, T Isenberg IEEE transactions on visualization and computer graphics 26 (1), 654-664Multiscale Molecular Visualization H Miao, T Klein, D Kouřil, P Mindek, K Schatz, ME Gröller, B Kozlíková, T Isenberg, I Viola Journal of molecular biology 431 (6), 1049-1070Adenita: Interactive 3D Modeling and Visualization of DNA Nanostructures E de Llano, H Miao, Y Ahmadi, AJ Wilson, M Beeby, I Viola, I Barisic bioRxiv, 849976A Multi-Scale Animation Framework for Biological Fibrous Structures T Klein, I Viola, P Mindek The Eurographics AssociationThe Vitruvian Baby: Interactive Reformation of Fetal Ultrasound Data to a T-Position E Mörth, RG Raidou, I Viola, NN SmitCuttlefish: Color Mapping for Dynamic Multi‐Scale Visualizations N Waldin, M Waldner, M Le Muzic, E Gröller, DS Goodsell, L Autin, AJ Olson, I Viola Computer Graphics ForumCOZOID: Contact Zone Identifier for Visual Analysis of Protein-Protein Interactions K Furmanová, J Byska, ME Gröller, I Viola, JJ Palecek, B Kozlíková BMC Bioinformatics 19(1): 125:1-125:17Exploring Visual Attention and Saliency Modeling for Task-Based Visual Analysis P Polatsek, M Waldner, I Viola, P Kapec, W Benesova Computers & Graphics. 72: 26-38Fast Cutaway Visualization of Sub-Terrain Tubular Networks A Konev, M Matusich, I Viola, H Schulze, D Cornel, J Waser Computers & Graphics. 75: 25-35DimSUM: Dimension and Scale Unifying Map for Visual Abstraction of DNA Origami Structures H Miao, ED Llano, T Isenberg, ME Gröller, I Barisic, I Viola Computers & Graphics Forum 37(3): 403-413A Survey of Surface-Based Illustrative Rendering for Visualization K Lawonn, I Viola, B Preim, T Isenberg Computers & Graphics Forum 37(6): 205-234Instant Construction and Visualization of Crowded Biological Environments T Klein, L Autin, B Kozlíková, DS Goodsell, AJ Olson, ME Gröller, I Viola IEEE Transactions on Visualization and Computer Graphics. 24(1): 862-872Visualization Multi-Pipeline for Communicating Biology P Mindek, D Kouril, J Sorger, D Toloudis, B Lyons, G Johnson, ME Gröller, I Viola IEEE Transactions on Visualization and Computer Graphics. 24(1): 883-892Multiscale Visualization and Scale-Adaptive Modification of DNA Nanostructures H Miao, ED Llano, J Sorger, Y Ahmadi, T Kekic, T Isenberg, ME Gröller, I Barisic, I Viola IEEE Transactions on Visualization and Computer Graphics. 24(1): 1014-1024Pondering the Concept of Abstraction in (Illustrative) Visualization I Viola, T Isenberg IEEE Transactions on Visualization and Computer Graphics. 24(9): 2573-2588Multi-GPU Rendering with the open Vulkan API LO Tolo, I Viola, A Geitung, H Soleim, D Patel NIK 2018Semantic Screen-Space Occlusion for Multiscale Molecular Visualization TB Koch, D Kouril, T Klein, P Mindek, I Viola VCBM 2018: 197-201A Visual Comparison of Hand-Drawn and Machine-Generated Human Metabolic Pathways HY Wu, M Nöllenburg, I Viola EuroVis (Posters) 2018: 57-59
